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  1. Content type: SOFTWARE ARTICLE

    The purpose of the MaxT algorithm is to provide a significance test algorithm that controls the family-wise error rate (FWER) during simultaneous hypothesis testing. However, the requirements in terms of compu...

    Authors: François Van Lishout, Francesco Gadaleta, Jason H. Moore, Louis Wehenkel and Kristel Van Steen

    Citation: BioData Mining 2015 8:36

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  2. Content type: Research

    Racial/ethnic differences for commonly measured clinical variables are well documented, and it has been postulated that population-specific genetic factors may play a role. The genetic heterogeneity of admixed...

    Authors: Logan Dumitrescu, Nicole A. Restrepo, Robert Goodloe, Jonathan Boston, Eric Farber-Eger, Sarah A. Pendergrass, William S. Bush and Dana C. Crawford

    Citation: BioData Mining 2015 8:35

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  3. Content type: Research

    Connectivity networks, which reflect multiple interactions between genes and proteins, possess not only a descriptive but also a predictive value, as new connections can be extrapolated and tested by means of ...

    Authors: Olga V. Valba, Sergei K. Nechaev, Mark G. Sterken, L. Basten Snoek, Jan E. Kammenga and Olga O. Vasieva

    Citation: BioData Mining 2015 8:33

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  4. Content type: Research

    In cancer, large-scale technologies such as next-generation sequencing and microarrays have produced a wide number of genomic features such as DNA copy number alterations (CNA), mRNA expression (EXPR), microRN...

    Authors: Hugo Gómez-Rueda, Emmanuel Martínez-Ledesma, Antonio Martínez-Torteya, Rebeca Palacios-Corona and Victor Trevino

    Citation: BioData Mining 2015 8:32

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  5. Content type: Research

    Diverse types of biological data, primary as well as derived, are available in various formats and are stored in heterogeneous resources. Database-specific as well as integrated search engines are available fo...

    Authors: Rajiv Karbhal, Sangeeta Sawant and Urmila Kulkarni-Kale

    Citation: BioData Mining 2015 8:31

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    The Erratum to this article has been published in BioData Mining 2016 9:8

  6. Content type: Software article

    The identification of interaction networks between proteins and complexes holds the promise of offering novel insights into the molecular mechanisms that regulate many biological processes. With increasing vol...

    Authors: Syed Haider, Zoltan Lipinszki, Marcin R. Przewloka, Yaseen Ladak, Pier Paolo D’Avino, Yuu Kimata, Pietro Lio’ and David M. Glover

    Citation: BioData Mining 2015 8:30

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  7. Content type: Research

    Modeling of the immune system – a highly non-linear and complex system – requires practical and efficient data analytic approaches. The immune system is composed of heterogeneous cell populations and hundreds ...

    Authors: Pinyi Lu, Vida Abedi, Yongguo Mei, Raquel Hontecillas, Stefan Hoops, Adria Carbo and Josep Bassaganya-Riera

    Citation: BioData Mining 2015 8:27

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  8. Content type: Research

    Molecular networks act as the backbone of molecular activities within cells, offering a unique opportunity to better understand the mechanism of diseases. While network data usually constitute only static netw...

    Authors: Yuji Zhang

    Citation: BioData Mining 2015 8:26

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  9. Content type: Methodology

    Although principal component analysis (PCA) is widely used for the dimensional reduction of biomedical data, interpretation of PCA results remains daunting. Most existing interpretation methods attempt to expl...

    Authors: H. Robert Frost, Zhigang Li and Jason H. Moore

    Citation: BioData Mining 2015 8:25

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  10. Content type: Review

    Biological data mining is a powerful tool that can provide a wealth of information about patterns of genetic and genomic biomarkers of health and disease. A potential disadvantage of data mining is volume and ...

    Authors: Talia L. Weiss, Amanda Zieselman, Douglas P. Hill, Solomon G. Diamond, Li Shen, Andrew J. Saykin and Jason H. Moore

    Citation: BioData Mining 2015 8:22

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  11. Content type: Research

    Microbial communities adapt to environmental conditions for optimizing metabolic flux. Such adaption may include cooperative mechanisms eventually resulting in phenotypic observables as emergent properties tha...

    Authors: Magnus Bosse, Alexander Heuwieser, Andreas Heinzel, Ivan Nancucheo, Hivana Melo Barbosa Dall’Agnol, Arno Lukas, George Tzotzos and Bernd Mayer

    Citation: BioData Mining 2015 8:21

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  12. Content type: Methodology

    Taxanes are naturally occurring compounds which belong to a powerful group of chemotherapeutic drugs with anticancer properties. Their current use, clinical efficacy, and unique mechanism of action indicate th...

    Authors: Kasi Murugan, Sangeetha Shanmugasamy, Saleh Al-Sohaibani, Naga Vignesh, Kandavel Palanikannan, Antonydhason Vimala and Gopal Ramesh Kumar

    Citation: BioData Mining 2015 8:19

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  13. Content type: Software article

    The study of interactions between molecules belonging to different biochemical families (such as lipids and nucleic acids) requires specialized data analysis methods. This article describes the DNA Microarray ...

    Authors: Tomasz Waller, Tomasz Gubała, Krzysztof Sarapata, Monika Piwowar and Wiktor Jurkowski

    Citation: BioData Mining 2015 8:18

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  14. Content type: Methodology

    In genome-wide studies, hundreds of thousands of hypothesis tests are performed simultaneously. Bonferroni correction and False Discovery Rate (FDR) can effectively control type I error but often yield a high ...

    Authors: Jiang Gui, Casey S. Greene, Con Sullivan, Walter Taylor, Jason H. Moore and Carol Kim

    Citation: BioData Mining 2015 8:17

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  15. Content type: Research

    Biorepositories linked to de-identified electronic medical records (EMRs) have the potential to complement traditional epidemiologic studies in genotype-phenotype studies of complex human diseases and traits. ...

    Authors: Logan Dumitrescu, Robert Goodloe, Yukiko Bradford, Eric Farber-Eger, Jonathan Boston and Dana C Crawford

    Citation: BioData Mining 2015 8:15

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  16. Content type: Research

    Accurate identification of linear B-cell epitopes plays an important role in peptide vaccine designs, immunodiagnosis, and antibody productions. Although several prediction methods have been reported, unsatisf...

    Authors: Weike Shen, Yuan Cao, Lei Cha, Xufei Zhang, Xiaomin Ying, Wei Zhang, Kun Ge, Wuju Li and Li Zhong

    Citation: BioData Mining 2015 8:14

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Page 5 of 11

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