Table 3 Subtyping results for each cancer dataset without feature selection
Dataset | Subtyping Identification Methods | ||||||
|---|---|---|---|---|---|---|---|
CC | PINS | NMF | ICB | SNF | NEMO | ||
AML | No. of clusters | 5 | 5 | 2 | 5 | 7 | 7 |
sil. score* | 0.02 | 0.02 | 0.13 | 0.05 | 0.02 | 0.04 | |
p-value** | 0.01 | 0.01 | 0.10 | 0.06 | 4.0E-03 | 0.02 | |
GBM | No. of clusters | 3 | 3 | 2 | 4 | 2 | 6 |
sil. score | 0.11 | 0.15 | 0.16 | 0.13 | 0.14 | 0.10 | |
p-value | 0.01 | 0.39 | 0.46 | 0.01 | 0.28 | 0.03 | |
BIC | No. of clusters | 3 | 3 | 2 | 4 | 4 | 4 |
sil. score | -0.01 | 0.06 | 0.03 | 0.00 | 0.02 | 0.02 | |
p-value | 0.05 | 0.37 | 0.09 | 0.03 | 0.70 | 0.41 | |
COAD | No. of clusters | 4 | 3 | 2 | 4 | 3 | 3 |
sil. score | 0.06 | 0.08 | 0.03 | 0.02 | 0.08 | 0.08 | |
p-value | 0.53 | 0.10 | 0.26 | 0.23 | 0.15 | 0.04 | |