Table 5 UMAP summary table
From: Polygenic risk modeling of tumor stage and survival in bladder cancer
| Â | Â | Parameters | Â | Clust. Param.a | Â | Â | Â | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Emb. | Transf. | LR | LC | Metr. | MiD | NN | NSR | RS | Mix | Sp | Clust. | parameter 1 | parameter 2 | Sil. | CHI | DBI |
Full | Log-z | 0.1 | 1 | mink | 0.2 | 8 | 7 | 2 | 0.5 | 0.25 | AP | pref=-34.3 | damp=0.714 | 0.619 | 2686.95 | 0.505 |
Full | Unif | 10 | 1 | hamm | 0.5 | 50 | 5 | 1 | 0.25 | 4 | mb k-m | bat s=10 | - | 0.836 | 13263.93 | 0.246 |
Full | Norm | 10 | 4 | hamm | 0.2 | 15 | 7 | 1 | 0.75 | 0.25 | SC | \(\gamma\)=10 | - | 0.602 | 1302.76 | 0.577 |
Part. | Log-z | 5 | 1 | hamm | 0.05 | 50 | 9 | 2 | 0.1 | 2 | birch | bf=13 | th=0.2 | 0.601 | 1151.23 | 0.495 |
Part. | Unif | 0.1 | 1 | hamm | 0.01 | 30 | 5 | 3 | 0.1 | 0.25 | AP | pref=-34.3 | damp=0.71 | 0.729 | 3384.71 | 0.414 |
Part. | Norm | 0.1 | 1 | hamm | 0.2 | 50 | 5 | 3 | 0.25 | 1 | birch | bf=78 | th=0.2 | 0.541 | 936.61 | 0.598 |