Table 10 Random Forest balanced accuracies during gene relevance investigation (as percentages)
From: Polygenic risk modeling of tumor stage and survival in bladder cancer
Pipeline | RF PI | RF RFECV | Dummy PI | Dummy RFECV |
|---|---|---|---|---|
tSNE Uniform | \(57.7\pm 10.9\) | \(61.3\pm 10.5\) | \(18.3\pm 3.5\) | \(16.3\pm 2.1\) |
tSNE Log-z | \(54.2\pm 7.0\) | \(58.4\pm 8.2\) | \(16.6\pm 1.4\) | \(16.5\pm 0.5\) |
tSNE Normal | \(53.2\pm 8.8\) | \(62.5\pm 8.8\) | \(15.3\pm 2.1\) | \(17.5\pm 1.9\) |
UMAP Uniform | \(57.7\pm 10.5\) | \(61.4\pm 10.5\) | \(15.5\pm 4.9\) | \(19.3\pm 2.2\) |
UMAP Log-z | \(56.5\pm 8.9\) | \(58.5\pm 8.9\) | \(16.5\pm 3.3\) | \(16.9\pm 3.9\) |
UMAP Normal | \(53.2\pm 8.8\) | \(62.5\pm 8.8\) | \(18.9\pm 1.5\) | \(16.4\pm 5.4\) |
Average | \(55.4\pm 9.1\) | \(60.7\pm 9.3\) | \(16.8\pm 3.3\) | \(17.2\pm 3.3\) |