Fig. 9

We compare variant calling performance for the same 17 individuals with samples sequenced from whole blood vs lymphoblastoid cell line (LCL). Performance in low-complexity regions (LCR) is shown with stars and performance in high-complexity regions (HCR) is shown with dots. Both precision and recall are plotted on a log-scale. Interestingly, whole blood and LCL samples exhibit very similar performance in high-complexity regions with LCLs slightly outperforming whole blood for most samples. However in low complexity regions, whole blood samples produce better precision while LCL samples produce better recall