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Fig. 9 | BioData Mining

Fig. 9

From: Estimating sequencing error rates using families

Fig. 9

We compare variant calling performance for the same 17 individuals with samples sequenced from whole blood vs lymphoblastoid cell line (LCL). Performance in low-complexity regions (LCR) is shown with stars and performance in high-complexity regions (HCR) is shown with dots. Both precision and recall are plotted on a log-scale. Interestingly, whole blood and LCL samples exhibit very similar performance in high-complexity regions with LCLs slightly outperforming whole blood for most samples. However in low complexity regions, whole blood samples produce better precision while LCL samples produce better recall

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BioData Mining

ISSN: 1756-0381