Table 2 Second benchmark of amino acids sequences in HP model [21]
From: Protein folding prediction in the HP model using ions motion optimization with a greedy algorithm
Sequence | length | E *1 | Amino acids sequence*2 |
|---|---|---|---|
1 | 12 | −11 | 1(10)51 |
2 | 14 | −11 | 1100(10)5 |
3 | 14 | −11 | 1(100)2(10)31 |
4 | 16 | −11 | 110(100)41 |
5 | 16 | −11 | 1(100)2(10)3010 |
6 | 17 | −11 | 1(100)51 |
7 | 17 | −17 | 1(11)711 |
8 | 20 | − 17 | 1(100)2(10)3(01)31 |
9 | 20 | −17 | 1(10)41(001)31 |
10 | 21 | −17 | 1(100)2(10100)21011 |
11 | 21 | −17 | 110(100)2(10)2(100)211 |
12 | 21 | −17 | 1100(10)3(01)2(001)21 |
13 | 22 | −17 | 1(100)2(10)3(010)2011 |
14 | 23 | −25 | 11(10)9111 |
15 | 24 | −17 | 1(100)711 |
16 | 24 | −25 | 11(10)3(01)711 |
17 | 24 | −25 | 11(10)4(01)611 |
18 | 30 | −25 | 11(100)41(01001)200111 |
19 | 30 | −25 | 11(100)3(10)2(01)2(001)311 |
20 | 37 | −29 | 11(100)3(10)21(001)3(0)5(10)2111 |