|
Prog
|
length
|
12 core servera
|
GT 730b
|
2 × K20
|
K80
| |
Accuracy %
|
|---|
|
bwa
|
36 bp
|
1900±50
|
–
|
–
|
–
|
Mapped reads
|
82.05
|
|
bwa
|
100 bp
|
4500±20
|
–
|
–
|
–
|
GCAT
|
98.91
|
|
0.6.2
|
36 bp
|
–
|
3270±2 (1.7±0.05)
|
5300±110 (2.8±0.10)
|
6500±180 (3.4±0.13)
|
Mapped reads
|
83.17
|
|
0.6.2
|
100 bp
|
–
|
1860±4 (0.4±0.002)
|
8700±140 (1.9±0.03)
|
11700±100 (2.6±0.02)
|
GCAT
|
97.49
|
|
0.7.107
|
36 bp
|
–
|
7600±6 (4.0±0.11)
|
12900±160 (6.8±0.20)
|
19900±500 (10.5±0.39)
|
Mapped reads
|
83.01
|
|
0.7.107
|
100 bp
|
–
|
2100±14 (0.5±0.004)
|
8800±70 (2.0±0.02)
|
12800±270 (2.8±0.06)
|
GCAT
|
98.43
|
|
Improvement ratio Barracuda 0.7.107 over 0.6.2
| |
| |
36 bp
|
–
|
2.32±0.003
|
2.43±0.06
|
3.07±0.11
|
Mapped reads
|
–0.16
|
| |
100 bp
|
–
|
1.13±0.01
|
1.00±0.02
|
1.09±0.02
|
GCAT
|
1.60
|
- In (brackets) speed relative to bwa 0.7.12. ± gives standard deviation estimated from five runs. There was almost no variation in mapping rate or accuracy reported by GCAT
-
a2.60GHz, see “Darwin” in Table 2
-
bEstimated for two GT 730 GPUs
