Table 5 Runtime results of PROTNN, FatCat and CE on the entire Protein Data Bank
From: ProtNN: fast and accurate protein 3D-structure classification in structural and topological space
Task | Total runtime1 | Runtime1/protein |
|---|---|---|
Building graph models | 23h:9m:57s | 0.9s |
Computation of attributes | 5d:8h:12m:29s | 4.9s |
Classification | 2h:55m:15s | 0.1s |
ProtNN (all) | 6d:10h:17m:41s | 5.9s |
FatCat | Forever2 | 1d:18h:31m:35s3 |
CE | Forever2 | 1d:8h:37m:34s3 |