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Table 1 Databases and corresponding web services

From: BioDB extractor: customized data extraction system for commonly used bioinformatics databases

Database Name Web service type: URL
NCBI E-utility Web Service (SOAP & WSDL): http://www.ncbi.nlm.nih.gov/books/NBK43082/
EMBL/EBI EMBL-EBI Web Services-REST: http://www.ebi.ac.uk/Tools/webservices/tutorials/02_rest
UniprotKB Programmatic access services-REST: http://www.uniprot.org/faq/28
PDB RCSB PDB RESTful Web Services- REST: http://www.rcsb.org/pdb/software/rest.do
KEGG REST-style KEGG API: http://www.kegg.jp/kegg/rest/keggapi.html