Table 1 Databases and corresponding web services
From: BioDB extractor: customized data extraction system for commonly used bioinformatics databases
Database Name | Web service type: URL |
|---|---|
NCBI | E-utility Web Service (SOAP & WSDL): http://www.ncbi.nlm.nih.gov/books/NBK43082/ |
EMBL/EBI | EMBL-EBI Web Services-REST: http://www.ebi.ac.uk/Tools/webservices/tutorials/02_rest |
UniprotKB | Programmatic access services-REST: http://www.uniprot.org/faq/28 |
PDB | RCSB PDB RESTful Web Services- REST: http://www.rcsb.org/pdb/software/rest.do |
KEGG | REST-style KEGG API: http://www.kegg.jp/kegg/rest/keggapi.html |