Figure 5

Examples of the genes having correlation between genotypes and expression values and Venn-diagram of the results of the SNP-analysis. A) Linear regression between the SNP_A-2052714 genotypes and gene PCNXL2 (ENSG00000135749, pecanex-like 2) expression. The dashed line illustrates the computed linear regression line. The expression data for each genotype is visualized using the boxplot representation. B) The gene structure of ARPC5L (ENSG00000136950, actin related protein 2/3 complex, subunit 5-like), the location of exon ENSE00001432409 expression correlating SNP SNP_A-8715816 (rs10986468) and the mean expressions of samples of each genotype. The normalized logarithmic expression values (y-axis) and the exon with the genomic location (x-axis) are connected with light blue line. Some of the exons are not represented in exon array and thus their expression values are not measured. C) Summary of the genes in each SNP analysis. Venn-diagram illustrates the detected genes in the levels of genes, transcripts and exons with two intervals.