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Figure 1 | BioData Mining

Figure 1

From: PGxClean: a quality control GUI for the Affymetrix DMET chip and other candidate gene studies with non-biallelic alleles

Figure 1

PGxClean interface. A screenshot of the interface for performing quality control analyses of data from SNP data chips (e.g. Affymetrix DMET chip, PED file). The quality control analyses are agnostic for the number of candidate alleles per Single Nucleotide Polymorphism (SNP)--moreover, in this package, you can analyze > biallelic SNPs. To use the software the user simply 1) Uploads a SNPchip file (DMET raw output or .PED compatible), 2) Sets parameters for missingness and Hardy-Weinberg Equilibrium, 3) Selects options for multiple testing correction, 4) Selects ‘Execute Workflow’ and then once the analysis is complete selects ‘Download Files’.

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BioData Mining

ISSN: 1756-0381