Table 8 11-factor and DPPS encoding for HLA-DRB1*0401
11-factor encoding | ||||||||
|---|---|---|---|---|---|---|---|---|
I C 50 cutoff | 100 | 300 | 500 | 1000 | 5000 | 10000 | 15000 | |
Sn Avg (%) | 96.00 | 95.51 | 89.92 | 75.49 | 37.65 | 35.00 | 20.00 | |
SR (ℓ 1) | Sp Avg (%) | 0.00 | 1.79 | 3.23 | 26.65 | 70.50 | 74.76 | 91.48 |
Acc Avg (%) | 77.42 | 69.47 | 61.44 | 53.55 | 58.37 | 61.94 | 82.26 | |
Sn Avg (%) | 97.40 | 97.46 | 98.10 | 93.56 | 94.70 | 98.00 | 25.00 | |
SVM | Sp Avg (%) | 27.04 | 32.14 | 19.73 | 28.63 | 30.08 | 24.76 | 98.15 |
Acc Avg (%) | 84.28 | 78.95 | 72.30 | 64.45 | 53.86 | 48.39 | 86.45 | |
DPPS encoding | ||||||||
Sn Avg (%) | 93.65 | 87.37 | 84.10 | 62.68 | 42.12 | 43.00 | 10.00 | |
SR (ℓ 1) | Sp Avg (%) | 43.33 | 38.06 | 43.91 | 56.15 | 78.58 | 84.76 | 95.93 |
Acc Avg (%) | 84.23 | 73.53 | 70.94 | 59.70 | 65.18 | 71.29 | 84.84 | |
Sn Avg (%) | 83.68 | 81.45 | 81.85 | 64.97 | 48.82 | 63.75 | 32.50 | |
SVM | Sp Avg (%) | 38.33 | 42.36 | 35.15 | 53.96 | 60.47 | 39.88 | 67.04 |
Acc Avg (%) | 75.11 | 70.40 | 66.33 | 60.00 | 56.26 | 47.58 | 62.58 | |