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Table 8 11-factor and DPPS encoding for HLA-DRB1*0401

From: Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via 1-minimization

  11-factor encoding
  I C 50 cutoff 100 300 500 1000 5000 10000 15000
  Sn Avg (%) 96.00 95.51 89.92 75.49 37.65 35.00 20.00
SR ( 1) Sp Avg (%) 0.00 1.79 3.23 26.65 70.50 74.76 91.48
  Acc Avg (%) 77.42 69.47 61.44 53.55 58.37 61.94 82.26
  Sn Avg (%) 97.40 97.46 98.10 93.56 94.70 98.00 25.00
SVM Sp Avg (%) 27.04 32.14 19.73 28.63 30.08 24.76 98.15
  Acc Avg (%) 84.28 78.95 72.30 64.45 53.86 48.39 86.45
  DPPS encoding
  Sn Avg (%) 93.65 87.37 84.10 62.68 42.12 43.00 10.00
SR ( 1) Sp Avg (%) 43.33 38.06 43.91 56.15 78.58 84.76 95.93
  Acc Avg (%) 84.23 73.53 70.94 59.70 65.18 71.29 84.84
  Sn Avg (%) 83.68 81.45 81.85 64.97 48.82 63.75 32.50
SVM Sp Avg (%) 38.33 42.36 35.15 53.96 60.47 39.88 67.04
  Acc Avg (%) 75.11 70.40 66.33 60.00 56.26 47.58 62.58