Table 4 11-factor and DPPS encoding for H2-IA b
11-factor encoding | ||||||||
|---|---|---|---|---|---|---|---|---|
I C 50 cutoff | 100 | 300 | 500 | 1000 | 5000 | 10000 | 15000 | |
Sn Avg (%) | 100.00 | 97.05 | 97.15 | 96.51 | 92.00 | 68.28 | 58.72 | |
SR (ℓ 1) | Sp Avg (%) | 0.00 | 9.67 | 12.65 | 16.44 | 24.17 | 48.05 | 60.15 |
Acc Avg (%) | 90.00 | 81.82 | 79.41 | 73.58 | 62.38 | 57.49 | 59.60 | |
Sn Avg (%) | 99.40 | 98.58 | 99.74 | 100.00 | 100.00 | 99.56 | 96.28 | |
SVM | Sp Avg (%) | 17.86 | 15.97 | 16.84 | 12.22 | 8.09 | 8.14 | 11.52 |
Acc Avg (%) | 91.94 | 84.11 | 82.32 | 74.84 | 59.80 | 50.82 | 45.31 | |
DPPS encoding | ||||||||
Sn Avg (%) | 96.93 | 95.23 | 94.08 | 89.43 | 67.82 | 48.98 | 34.81 | |
SR (ℓ 1) | Sp Avg (%) | 22.50 | 34.44 | 38.41 | 57.65 | 55.34 | 63.87 | 74.77 |
Acc Avg (%) | 89.99 | 84.63 | 82.40 | 79.84 | 62.39 | 56.94 | 58.79 | |
Sn Avg (%) | 85.77 | 84.58 | 87.36 | 90.62 | 85.72 | 84.75 | 84.59 | |
SVM | Sp Avg (%) | 49.50 | 54.22 | 51.01 | 56.44 | 42.57 | 41.77 | 39.28 |
Acc Avg (%) | 82.40 | 79.26 | 79.77 | 80.15 | 66.88 | 61.81 | 57.30 | |