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Table 1 Selected GO‐BP categories with high precision values

From: Prediction of Drosophila melanogaster gene function using Support Vector Machines

Category names

Size

Max‐prec‐40

Detection of external stimulus GO 0009581

36

1.000

Detection of light stimulus GO 0009583

28

1.000

Rhodopsin mediated phototransduction GO 0009586

14

1.000

Detection of stimulus GO 0051606

38

0.964

Chitin metabolism GO 0006030

25

0.958

Regulation of mitosis GO 0007088

21

0.938

Phototransduction GO 0007602

25

0.938

Fatty acid oxidation GO 0019395

20

0.929

Oxidative phosphorylation GO 0006119

68

0.919

ATP synthesis coupled electron transport sensu Eukaryota GO 0042775

22

0.917

Cell matrix adhesion GO 0007160

25

0.909

ATP synthesis coupled electron transport GO 0042773

22

0.906

Segment specification GO 0007379

21

0.900

Interphase of mitotic cell cycle GO 0051329

16

0.900

Cell substrate adhesion GO 0031589

25

0.875

Homophilic cell adhesion GO 0007156

16

0.854

Regulation of exocytosis GO 0017157

20

0.850

Aerobic respiration GO 0009060

31

0.845

Response to light stimulus GO 0009416

33

0.839

Chromosome condensation GO 0030261

27

0.833

Sphingolipid metabolism GO 0006665

12

0.833

Neuromuscular junction development GO 0007528

19

0.833

Chromatin assembly GO 0031497

20

0.833

Nuclear import GO 0051170

33

0.817

Glucosamine metabolism GO 0006041

27

0.813

N acetylglucosamine metabolism GO 0006044

27

0.813

SRP dependent cotranslational protein targeting to membrane GO 0006614

12

0.813

RNA transport GO 0050658

14

0.800

Membrane lipid biosynthesis GO 0046467

20

0.792

DNA amplification GO 0006277

19

0.788

Chorion gene amplification GO 0007307

18

0.783

DNA dependent DNA replication GO 0006261

53

0.776

response to radiation GO 0009314

37

0.774

Ribosome biogenesis GO 0007046

18

0.771

Regulation of DNA metabolism GO 0051052

13

0.771

Ventral cord development GO 0007419

14

0.767

Protein targeting to membrane GO 0006612

12

0.750

Neuron recognition GO 0008038

12

0.750

Protein targeting to ER GO 0045047

12

0.750

  1. Each one of these 39 categories has a fold‐average precision‐at‐40 (i.e. that corresponds to recall value = 0.4) equal or larger than 0.75. The number of genes in the dataset annotated with a category is also shown. Bold fonts are used for the 24 GO‐BP categories that show minimal redundancy with genes found in other categories.
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BioData Mining

ISSN: 1756-0381