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Table 5 NCBI Dataset Motifs

From: Multifactor dimensionality reduction analysis identifies specific nucleotide patterns promoting genetic polymorphisms

SNP Model * SNP Type Nucleotide Positions Significance X2
M A/C +1, +2 P << 0.001 0.001
S C/G -1, +1, +2 P << 0.001 0.001
W A/T -1, +1, +2 P << 0.001 0.001
K G/T -1, +1, +2 P << 0.001 0.001
R A/G -1, +1, +2, +3 P << 0.001 0.001
Y C/T -2, -1, +1, +2, +3 P << 0.001 0.001
  1. SNP type represents identity of nucleic acid at SNP position. Motif represents positions within templating strand found to have significant association with sequences carrying an identified SNP compared to control sequences. Here position -1 is adjacent to the SNP site on the 3' end and position +1 is adjacent to the SNP site on the 5' end.