Fig. 2

A Final Pareto front of an example AutoQTL run from 18 QTL dataset. Pipelines (blue dots) with arrows are those that are optimized for both scoring metrics. The pipeline marked with a star is the pipeline with a test R² matching the test R² before GP was executed. B Mean SHAP feature importance scores across the five pipelines from the example AutoQTL run from 18 QTL dataset for each locus. Black error bars represent S.E.M. Red-blue gradient denotes higher (red) and lower (blue) mean feature importance scores