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Table 4 Confusion matrix for predictions by GO sub-ontology (Biological Process (GO_BP), Cellular Component (GO_CC), and Molecular Function (GO_MF). Note that this matrix does not include accurately predicted ‘O’ and ‘EOS’ tags since these instances are omitted during calculation of the modified F1 score. Results are from our best model M_9

From: A Gated Recurrent Unit based architecture for recognizing ontology concepts from biological literature

True Class

Predicted Class

  

GO_BP

GO_MF

GO_CC

‘O’

‘EOS’

 

GO_BP

3419

1

25

393

0

 

GO_MF

0

96

1

2

0

 

GO_CC

7

0

1288

116

0

 

O

68

0

34

N/A

4

 

EOS

0

0

0

0

N/A