Table 4 t-SNE summary table
From: Polygenic risk modeling of tumor stage and survival in bladder cancer
| Â | Â | Parameters | Â | Clust. Param.a | Â | Â | Â | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Emb. | Transf. | \(\theta\) | EE | LR | Metr. | Perp. | Clust. | parameter 1 | parameter 2 | Sil. | CHI | DBI |
Full | Log-z | 0.35 | 20 | 17 | corr | 10 | hdbscan | min cl s=50 | min s=1 | 0.761 | 2831.66 | 0.343 |
Full | Unif | 0.35 | 12 | 100 | corr | 10 | hdbscan | min cl s=50 | min s=1 | 0.805 | 3515.45 | 0.269 |
Full | Norm | 0.57 | 16 | 50 | cheb | 25 | birch | bf=5 | th=0.2 | 0.463 | 600.45 | 0.774 |
Part. | Log-z | 0.57 | 20 | 200 | corr | 25 | birch | bf=54 | th=0.73 | 0.417 | 601.63 | 0.781 |
Part. | Unif | 0.57 | 24 | 25 | cheb | 20 | birch | bf=80 | th=0.26 | 0.416 | 549.99 | 0.801 |
Part. | Norm | 0.57 | 20 | 1000 | cheb | 25 | SC | neighbors=10 | - | 0.355 | 409.97 | 0.828 |