Table 12 Average computational times (in seconds) for each single operation performed in the analysis pipeline during the complete experimental embedding
From: Polygenic risk modeling of tumor stage and survival in bladder cancer
Pipeline | Forest Emb. | Dim. Red. | Clustering | Param. Comb. |
|---|---|---|---|---|
tSNE Uniform | \(7.17\pm 1.38\) | \(6.95\pm 0.55\) | \(34.14\pm 35.18\) | 615 |
tSNE Log-z | \(7.16\pm 1.61\) | \(10.18\pm 8.65\) | \(33.39\pm 36.82\) | 601 |
tSNE Normal | \(6.46\pm 1.38\) | \(9.54\pm 8.89\) | \(33.71\pm 37.63\) | 608 |
UMAP Uniform | \(3.47\pm 1.12\) | \(8.15\pm 11.92\) | \(151.25\pm 305.05\) | 2173 |
UMAP Log-z | \(3.72\pm 1.74\) | \(13.04\pm 15.78\) | \(73.27\pm 128.05\) | 2170 |
UMAP Normal | \(4.19\pm 1.39\) | \(3.59\pm 0.67\) | \(76.61\pm 131.14\) | 2173 |