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Table 6 Number of nodes in the input layer (genes) and in the first hidden layer (biological information) according to the type of biological information used to relate genes among them

From: Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data

Organism

Biological information

Source

Number of genes (input layer)

Number of nodes (first hidden layer)

 

PPI

[23]

3553

348

Mouse

GRN

[29]

8307

348

 

Signaling pathway

[26]

3737

92

Human

Signaling pathway

[26]

2987

93