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Table 6 Number of nodes in the input layer (genes) and in the first hidden layer (biological information) according to the type of biological information used to relate genes among them

From: Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data

Organism Biological information Source Number of genes (input layer) Number of nodes (first hidden layer)
  PPI [23] 3553 348
Mouse GRN [29] 8307 348
  Signaling pathway [26] 3737 92
Human Signaling pathway [26] 2987 93