Table 6 Functional modules
Model | Criterion for near-clique mining | Number of functional modules detected | Functional modules with ambiguous elements (%) | Functional modules with exogenous elements (%) |
|---|---|---|---|---|
Tabular manual HCM model | Page Rank | 17 | 0.00 | 0.00 |
Tabular manual HCM model | Node Degree | 18 | 0.00 | 0.00 |
INDRA-assembled PubMed HCM model | Page Rank | 6 | 50.00 | 16.67 |
INDRA-assembled PubMed HCM model | Node Degree | 5 | 60.00 | 20.00 |
INDRA-assembled PubMed+PathwayCommons HCM model | Page Rank | 61 | 4.92 | 77.05 |
INDRA-assembled PubMed+PathwayCommons HCM model | Node Degree | 60 | 5.00 | 80.00 |
Truncated INDRA DB HCM model | Page Rank | 2 | 0.00 | 0.00 |
Truncated INDRA DB HCM model | Node Degree | 2 | 0.00 | 0.00 |
INDRA DB HCM model | Page Rank | 27 | 22.22 | 18.52 |
INDRA DB HCM model | Node Degree | 33 | 21.21 | 15.15 |