Table 6 Comparison of the PCA and autoencoder methods
From: Prediction of synergistic drug combinations using PCA-initialized deep learning
Method | MSE | RMSE | Pearson’s r |
|---|---|---|---|
Deep learning (PCA) | 240.6 ± 38.44 | 15.14 ± 1.82 | 0.77 ± 0.02 |
Deep learning | 254.6 ± 41.32 | 15.95 ± 1.57 | 0.73 ± 0.04 |
Deep learning (autoencoder) | 298.06 ± 48.61 | 17.26 ± 1.53 | 0.68 ± 0.02 |