Fig. 6
From: Indels in SARS-CoV-2 occur at template-switching hotspots

RNA structure was simulated using RNAfold and visualized with VARNA. The zoomed-in subsections of RNA are from the selected regions of both high indel and discontinuous transcription breakpoint enrichment. Green areas represent regions with an indel. Note that the structures zoomed-in subgenomic RNAs have been manually refined to avoid overlap of loops for easier visualization