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Fig. 1 | BioData Mining

Fig. 1

From: LightCUD: a program for diagnosing IBD based on human gut microbiome data

Fig. 1

Schematic of the LightCUD framework. The input data to LightCUD is the raw reads of the sample in FASTA format. First, with the ‘-t’ parameter, LightCUD decides the data type. For different data types, different customized reference databases are used. For both WGS and 16S data, LightCUD goes through a two-stage judgment. At the first stage, LightCUD decides whether the query sample is healthy or IBD. If IBD, LightCUD further judges the specific type, namely, UC or CD

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