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Table 4 Different encodings from deep learning models (see Table 1 for details)

From: Encodings and models for antimicrobial peptide classification for multi-resistant pathogens

Encoding Description Summary Used in Used along with
ProtVec amino acid sequences are encoded as a distributed representation of k-mers Density: +
Information: + 		[124]  
Voxel structures of proteins are encoded as voxels Density: o
Information: + 		[125, 126]  
Matrix mimicks images by regarding the respective entries of PSSMs as pixel densities Density: o
Information: + 		[127, 129, 130] PSSM
Autoencoder extracts representative characteristics in order to reproduce the input as good as possible Density: +
Information: o 		[131]  
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BioData Mining

ISSN: 1756-0381