Knomics-Biota - a system for exploratory analysis of human gut microbiota data

Table 1 Comparison of Knomics-Biota functionality with other pipelines

Pipeline name	“Raw” data analysis		Statistical analysis			External datasets availability	Data sharing
Pipeline name	16S rRNA sequencing	WGS	Basic statistics	Group comparison	Interactive Visualizations	External datasets availability	Data sharing
Knomics-Biota	Yes	Yes	Yes	Yes	Yes	Yes	Yes
Nephele	Yes	Yes	Yes	Yes	No	Yes (data from HMP [16] only)	Yes
MG-RAST	Yes	Yes	Yes	No	No	Yes	Yes
One Codex	No	Yes	Yes	Yes	No	No	Yes
GUSTA ME	No	No	Yes	Yes	No	No	No
CosmosID	No	Yes	Yes	Yes	No	No	Yes
QIAGEN Microbial Genomics Pro Suite	No	Yes	Yes	No	No	No	NA
Calypso	Yes	No	Yes	Yes	No	No	No

ISSN: 1756-0381