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Table 1 Comparison of Knomics-Biota functionality with other pipelines

From: Knomics-Biota - a system for exploratory analysis of human gut microbiota data

Pipeline name “Raw” data analysis Statistical analysis External datasets availability Data sharing
16S rRNA sequencing WGS Basic statistics Group comparison Interactive Visualizations
Knomics-Biota Yes Yes Yes Yes Yes Yes Yes
Nephele Yes Yes Yes Yes No Yes (data from HMP [16] only) Yes
MG-RAST Yes Yes Yes No No Yes Yes
One Codex No Yes Yes Yes No No Yes
GUSTA ME No No Yes Yes No No No
CosmosID No Yes Yes Yes No No Yes
QIAGEN Microbial Genomics Pro Suite No Yes Yes No No No NA
Calypso Yes No Yes Yes No No No