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Table 5 Example of DNA methylation matrix on breast cancer data

From: Combining DNA methylation and RNA sequencing data of cancer for supervised knowledge extraction

DNA methylation

GDA_dMeth

SCN3A_dMeth

SCN3B_dMeth

Class

TCGA-A7-A4SD-01A-11D-A268-05

1.6

2.3

2.0

Tumoral

TCGA-GI-A2C9-01A-11D-A21R-05

1.9

2.7

2.3

Tumoral

..

..

..

..

..

TCGA-3C-AALK-01A-11D-A41Q-05

3.8

2.1

3.8

Normal

  1. Also in this case, rows are represented by the TCGA aliquot of samples, reporting the type of the performed NGS experiment (DNA methylation). The gene methylation quantity values are reported for all samples
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BioData Mining

ISSN: 1756-0381