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Table 5 Example of DNA methylation matrix on breast cancer data

From: Combining DNA methylation and RNA sequencing data of cancer for supervised knowledge extraction

DNA methylation GDA_dMeth SCN3A_dMeth SCN3B_dMeth Class
TCGA-A7-A4SD-01A-11D-A268-05 1.6 2.3 2.0 Tumoral
TCGA-GI-A2C9-01A-11D-A21R-05 1.9 2.7 2.3 Tumoral
.. .. .. .. ..
TCGA-3C-AALK-01A-11D-A41Q-05 3.8 2.1 3.8 Normal
  1. Also in this case, rows are represented by the TCGA aliquot of samples, reporting the type of the performed NGS experiment (DNA methylation). The gene methylation quantity values are reported for all samples