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Table 4 Example of RNA sequencing matrix on breast cancer data

From: Combining DNA methylation and RNA sequencing data of cancer for supervised knowledge extraction

RNA sequencing

GDA_rna

SCN3A_rna

SCN3B_rna

Class

TCGA-A1-A0SD-01A-11R-A115-07

0.6

28.4

43.6

Normal

TCGA-A7-A4SD-01A-11R-A266-07

0.0

6.4

1.9

Tumoral

..

..

..

..

..

TCGA-3C-AALK-01A-11R-A41B-07

0.0

5.3786

18.2044

Tumoral

  1. The columns represent genes, and the last shows the class. For each row, we consider the full TCGA identifier of the sample. The full identifiers is called TCGA aliquot and reports the type of the performed NGS experiment (RNA sequencing). The gene expression values are reported for all samples
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BioData Mining

ISSN: 1756-0381