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Table 6 Comparison of our method, orphelia, MGC and prodigal on testing data

From: Feature selection for gene prediction in metagenomic fragments

  Our method (SVM) Orphelia MGC Prodigal
Genomes Sp Sn H.M. Sp Sn H.M Sp Sn H.M Sp Sn H.M
A. fulgidus 96.46 ±0.16 87.26 ±0.19 91.61 ±0.11 88.57 ±0.21 80.58 ±0.17 84.38 ±0.16 95.04 ±0.14 84.13 ±0.23 89.31 ±0.15 95.79 ±0.15 96.13 ±0.08 95.96 ±0.10
M. jannaschii 97.29 ±0.13 94.58 ±0.15 95.91 ±0.12 95.20 ±0.17 90.46 ±0.16 92.77 ±0.14 97.19 ±0.12 92.63 ±0.19 94.85 ±0.13 95.14 ±0.14 95.15 ±0.15 95.15 ±0.12
N. pharaonis 97.37 ±0.08 82.71 ±0.20 89.44 ±0.13 75.99 ±0.34 68.74 ±0.34 72.17 ±0.33 95.28 ±0.12 85.79 ±0.20 90.29 ±0.14 97.48 ±0.10 95.77 ±0.18 96.62 ±0.12
B. aphidicola 97.94 ±0.11 93.28 ±0.37 95.56 ±0.22 95.54 ±0.28 89.40 ±0.33 92.37 ±0.22 98.01 ±0.19 91.11 ±0.37 94.43 ±0.23 96.65 ±0.27 96.97 ±0.26 96.81 ±0.25
C. jeikeium 97.31 ±0.11 88.64 ±0.21 92.77 ±0.14 79.52 ±0.22 74.23 ±0.23 76.79 ±0.22 96.13 ±0.11 87.70 ±0.23 91.72 ±0.17 95.31 ±0.19 94.99 ±0.10 95.15 ±0.10
C. tepidum 95.93 ±0.12 80.84 ±0.23 87.74 ±0.17 77.51 ±0.22 66.95 ±0.23 71.85 ±0.21 93.42 ±0.14 79.08 ±0.24 85.65 ±0.18 94.35 ±0.14 88.15 ±0.19 91.14 ±0.11
H. pylori 97.67 ±0.12 92.09 ±0.21 94.80 ±0.12 94.17 ±0.20 88.99 ±0.22 91.5 ±0.20 97.77 ±0.14 89.70 ±0.22 93.56 ±0.17 95.29 ±0.14 93.07 ±0.14 94.16 ±0.12
P. marinus 98.58 ±0.07 87.65 ±0.25 92.79 ±0.16 94.41 ±0.20 84.984 ±0.24 89.45 ±0.20 97.71 ±0.11 87.92 ±0.20 92.55 ±0.12 97.52 ±0.17 91.96 ±0.20 94.66 ±0.15
W. endosymbiont 88.10 ±0.33 89.66 ±0.20 88.87 ±0.20 86.24 ±0.20 83.79 ±0.20 84.99 ±0.20 88.25 ±0.20 87.85 ±0.20 88.05 ±0.20 81.52 ±0.41 92.27 ±0.25 86.56 ±0.31
B. pseudomallei 97.56 ±0.06 85.83 ±0.19 91.32 ±0.11 69.54 ±0.31 64.79 ±0.22 67.08 ±0.26 94.79 ±0.13 87.84 ±0.25 91.18 ±0.18 94.28 ±0.09 96.47 ±0.09 95.37 ±0.08
P. aeruginosa 97.46 ±0.08 88.88 ±0.14 93.05 ±0.11 71.21 ±0.20 68.40 ±0.18 69.78 ±0.19 96.16 ±0.09 91.70 ±0.11 93.88 ±0.08 96.47 ±0.05 97.88 ±0.06 97.17 ±0.05
Average 96.53 88.31 92.17 84.35 78.30 81.19 95.43 87.76 91.40 94.53 94.44 94.43
Average S.D. 0.12 0.21 0.15 0.25 0.24 0.22 0.15 0.22 0.16 0.17 0.15 0.14