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Table 6 Comparison of our method, orphelia, MGC and prodigal on testing data

From: Feature selection for gene prediction in metagenomic fragments

 

Our method (SVM)

Orphelia

MGC

Prodigal

Genomes

Sp

Sn

H.M.

Sp

Sn

H.M

Sp

Sn

H.M

Sp

Sn

H.M

A. fulgidus

96.46 ±0.16

87.26 ±0.19

91.61 ±0.11

88.57 ±0.21

80.58 ±0.17

84.38 ±0.16

95.04 ±0.14

84.13 ±0.23

89.31 ±0.15

95.79 ±0.15

96.13 ±0.08

95.96 ±0.10

M. jannaschii

97.29 ±0.13

94.58 ±0.15

95.91 ±0.12

95.20 ±0.17

90.46 ±0.16

92.77 ±0.14

97.19 ±0.12

92.63 ±0.19

94.85 ±0.13

95.14 ±0.14

95.15 ±0.15

95.15 ±0.12

N. pharaonis

97.37 ±0.08

82.71 ±0.20

89.44 ±0.13

75.99 ±0.34

68.74 ±0.34

72.17 ±0.33

95.28 ±0.12

85.79 ±0.20

90.29 ±0.14

97.48 ±0.10

95.77 ±0.18

96.62 ±0.12

B. aphidicola

97.94 ±0.11

93.28 ±0.37

95.56 ±0.22

95.54 ±0.28

89.40 ±0.33

92.37 ±0.22

98.01 ±0.19

91.11 ±0.37

94.43 ±0.23

96.65 ±0.27

96.97 ±0.26

96.81 ±0.25

C. jeikeium

97.31 ±0.11

88.64 ±0.21

92.77 ±0.14

79.52 ±0.22

74.23 ±0.23

76.79 ±0.22

96.13 ±0.11

87.70 ±0.23

91.72 ±0.17

95.31 ±0.19

94.99 ±0.10

95.15 ±0.10

C. tepidum

95.93 ±0.12

80.84 ±0.23

87.74 ±0.17

77.51 ±0.22

66.95 ±0.23

71.85 ±0.21

93.42 ±0.14

79.08 ±0.24

85.65 ±0.18

94.35 ±0.14

88.15 ±0.19

91.14 ±0.11

H. pylori

97.67 ±0.12

92.09 ±0.21

94.80 ±0.12

94.17 ±0.20

88.99 ±0.22

91.5 ±0.20

97.77 ±0.14

89.70 ±0.22

93.56 ±0.17

95.29 ±0.14

93.07 ±0.14

94.16 ±0.12

P. marinus

98.58 ±0.07

87.65 ±0.25

92.79 ±0.16

94.41 ±0.20

84.984 ±0.24

89.45 ±0.20

97.71 ±0.11

87.92 ±0.20

92.55 ±0.12

97.52 ±0.17

91.96 ±0.20

94.66 ±0.15

W. endosymbiont

88.10 ±0.33

89.66 ±0.20

88.87 ±0.20

86.24 ±0.20

83.79 ±0.20

84.99 ±0.20

88.25 ±0.20

87.85 ±0.20

88.05 ±0.20

81.52 ±0.41

92.27 ±0.25

86.56 ±0.31

B. pseudomallei

97.56 ±0.06

85.83 ±0.19

91.32 ±0.11

69.54 ±0.31

64.79 ±0.22

67.08 ±0.26

94.79 ±0.13

87.84 ±0.25

91.18 ±0.18

94.28 ±0.09

96.47 ±0.09

95.37 ±0.08

P. aeruginosa

97.46 ±0.08

88.88 ±0.14

93.05 ±0.11

71.21 ±0.20

68.40 ±0.18

69.78 ±0.19

96.16 ±0.09

91.70 ±0.11

93.88 ±0.08

96.47 ±0.05

97.88 ±0.06

97.17 ±0.05

Average

96.53

88.31

92.17

84.35

78.30

81.19

95.43

87.76

91.40

94.53

94.44

94.43

Average S.D.

0.12

0.21

0.15

0.25

0.24

0.22

0.15

0.22

0.16

0.17

0.15

0.14

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