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Table 1 Parameters used for generating simulated experiment 1 data

From: Collective feature selection to identify crucial epistatic variants

Type of Effect (100 and 500 SNPs) Dataset name Causal SNP Model (Penetrance: 0.1, 0.5 and 0.9)
Main Effect 1SNP G1
2SNP G1, G2
3SNP G1, G2, G3
4SNP G1, G2, G3, G4
Interaction Effect case1_control0 G1 < −>G2
case1_control1 G1 < −>G2
G99 < −>G100
case2_control0 G1 < −>G2
G3 < −>G4
case2_control2 G1 < −>G2
G3 < −>G4
G97 < −>G98
G99 < −>G100
  1. All datasets consisted of 2000 cases and 2000 controls (4000 samples in total). ‘G’ here refers to the SNP ID prefix