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Table 3 Number of scenarios for which PICV yielded smaller median, maximum differences between training and testing

From: Improving machine learning reproducibility in genetic association studies with proportional instance cross validation (PICV)

Measure, Model

PICV median less than traditional CV median (out of 15)

PICV maximum less than traditional CV maximum (out of 15)

Prevalence

Prevalence

0.02

0.1

0.5

0.02

0.1

0.5

Specificity, without interaction

15

15

12

15

15

15

Specificity, with interaction

15

15

15

15

15

15

NPV, without interaction

14

9

9

11

8

8

NPV, with interaction

8

9

10

8

9

9