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Table 3 Average run time for each GSA method

From: Gene set analysis methods: a systematic comparison

Method

Ave Run Time

SAFE

Default Global Statistics

• aveDiff: 18 mins

• Pearson: 16 mins

• FET: 17 mins

• Wilcoxon: 17 mins

10,000 Permutations: 149 mins

10,000 Bootstraps: 134 mins

sigPathway

4:08 mins

GSEA

Competitive: 39:58 mins

Self-Contained: 34:28 mins

CAMERA

00:15 mins