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Table 3 Average run time for each GSA method

From: Gene set analysis methods: a systematic comparison

Method Ave Run Time
SAFE Default Global Statistics
• aveDiff: 18 mins
• Pearson: 16 mins
• FET: 17 mins
• Wilcoxon: 17 mins
10,000 Permutations: 149 mins
10,000 Bootstraps: 134 mins
sigPathway 4:08 mins
GSEA Competitive: 39:58 mins
Self-Contained: 34:28 mins
CAMERA 00:15 mins