Method | Alternative Parameters |
---|---|
GSEA | Calculating the FDR q-values based on the reported p-values as opposed to the q-values reported, which are based on the median. |
SAFE | Method: Bootstrap (‘Bootstrap.q’) Global Statistic: aveDiff, FET, Pearson Num. of Permutations (Pi.Mat): 10,000 |
sigPathway | Not applicable |
CAMERA | Not applicable |