Table 3 Group of enriched biclusters related to cancer obtained with the (212)-simGIC fitness function for the GDS4794 dataset
From: Pairwise gene GO-based measures for biclustering of high-dimensional expression data
id. | Oncogenes | Candidate cancer genes | Number of |
|---|---|---|---|
biclusters | genes in | ||
each bicluster | |||
bi_2 | BRIP1 | 6 | |
bi_13 | CRTC1, KLF6 | ERF | 8 |
bi_19 | PIK3R1 | 12 | |
bi_21 | FANCD2 | 11 | |
bi_22 | SMARCE1 | 13 | |
bi_32 | ATP2B3 | AMPH, ANK2 | 18 |
bi_41 | RPL22 | 12 | |
bi_53 | BLM, MSH2, REL, MYC | SMAD2 | 18 |
bi_63 | EZH2, TFE3, ACSL6 | 28 | |
bi_65 | ELF4 | GNA13 | 11 |
bi_82 | PALB2, TPR, NUP98, NUP214 | CHD4, DBR1 | 16 |
bi_4 | ZHX2 | 7 | |
bi_11 | CLCN4 | 9 | |
bi_15 | SNRPA, DBR1 | 13 | |
bi_25 | NR3C2, CHD2 | 18 | |
bi_26 | TTK, PHIP, GLI3 | 16 | |
bi_29 | GRM3 | 10 | |
bi_34 | PRKCG, RASGEF1A | 17 | |
bi_35 | CACNA2D1 | 16 | |
bi_39 | PTPRT, NGEF, GRIA3, CHST1, DUSP7 | 17 | |
bi_70 | AMPH, BRINP3, SPTBN4, RBMX | 22 | |
bi_72 | NCOR1, NCOR2, RBMX, TCEB1 | 19 | |
bi_89 | PPM1D, TDG, RNF103, CTIF | 17 | |
bi_100 | SLC25A48, TAF1, RASSF6 | 46 |