Table 2 Biclusters obtained by the biclustering algorithm for each fitness functions for GDS3289, GDS2415, GDS2918, GDS3966, GDS3139,GDS4794 datasets
From: Pairwise gene GO-based measures for biclustering of high-dimensional expression data
Fitness function | Enriched | |||
|---|---|---|---|---|
Dataset | Parameters | Size | biclusters (%) | |
GOmeasure | (M1, M2, M3) | BP | ||
(2, 1, 1) | (15.3 ×14.0) | 38 | ||
simUI | (2, 1, 2) | (9.4 ×14.0) | 57 | |
(2, 2, 1) | (20.0 ×3.0) | 39 | ||
(2, 1, 1) | (17.1 ×13.5) | 28 | ||
GDS3289 | simGIC | (2, 1, 2) | (10.6 ×14.0) | 92 |
(2, 2, 1) | (28.4 ×3.0) | 18 | ||
(2, 1, 0) | (21.6 ×14.3) | 1 | ||
0 | (2, 2, 0) | (40.6 ×3.4) | 5 | |
(2, 1, 1) | (18.1 ×13.9) | 4 | ||
simUI | (2, 1, 2) | (9.1 ×13.4) | 36 | |
(2, 2, 1) | (21.9 ×3.1) | 8 | ||
(2, 1, 1) | (22.9 ×3.1) | 0 | ||
GDS2415 | simGIC | (2, 1, 2) | (13.4 ×12.5) | 44 |
(2, 2, 1) | (35.3 ×3.0) | 8 | ||
(2, 1, 0) | (23.2 ×13.4) | 0 | ||
0 | (2, 2, 0) | (41.7 ×3.2) | 0 | |
(2, 1, 1) | (40.3 ×6.8) | 1 | ||
simUI | (2, 1, 2) | (40.0 ×6.8) | 0 | |
(2, 2, 1) | (53.3 ×3.4) | 2 | ||
(2, 1, 1) | (31.0 ×6.7) | 10 | ||
GDS2918 | simGIC | (2, 1, 2) | (13.3 ×7.3) | 42 |
(2, 2, 1) | (34.4 ×3.4) | 23 | ||
(2, 1, 0) | (36.5 ×7.2) | 1 | ||
0 | (2, 2, 0) | (54.0 ×3.3) | 1 | |
(2, 1, 1) | (26.2 ×17.8) | 4 | ||
simUI | (2, 1, 2) | (26.5 ×18.3) | 6 | |
(2, 2, 1) | (41.8 ×3.4) | 1 | ||
(2, 1, 1) | (23.2 ×17.8) | 11 | ||
GDS3966 | simGIC | (2, 1, 2) | (13.9 ×19.1) | 45 |
(2, 2, 1) | (35.7 ×3.3) | 6 | ||
(2, 1, 0) | (26.5 ×18.3) | 3 | ||
0 | (2, 2, 0) | (42.3 ×3.4) | 0 | |
(2, 1, 1) | (35.6 ×13.0) | 2 | ||
simUI | (2, 1, 2) | (35.2 ×13.2) | 3 | |
(2, 2, 1) | (28.9 ×9.7) | 1 | ||
(2, 1, 1) | (31.6 ×13.4) | 7 | ||
GDS3139 | simGIC | (2, 1, 2) | (18.4 ×13.1) | 23 |
(2, 2, 1) | (26.9 ×9.9) | 4 | ||
(2, 1, 0) | (35.1 ×13.4) | 2 | ||
0 | (2, 2, 0) | (27.7 ×9.8) | 3 | |
(2, 1, 1) | (26.0 ×17.1) | 5 | ||
simUI | (2, 1, 2) | (25.7 ×17.2) | 3 | |
(2, 2, 1) | (46.3 ×3.8) | 0 | ||
(2, 1, 1) | (23.7 ×16.7) | 13 | ||
GDS4794 | simGIC | (2, 1, 2) | (17.0 ×16.43) | 28 |
(2, 2, 1) | (36.6 ×3.7) | 10 | ||
(2, 1, 0) | (25.7 ×17.1) | 4 | ||
0 | (2, 2, 0) | (46.8 ×3.8) | 1 |