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Table 6 Examples of packages and libraries supporting literate programming and report generation in popular analytical/statistical software packages

From: Methods for enhancing the reproducibility of biomedical research findings using electronic health records

Statistical/Analytical tool Relevant packages
R RMarkdown, Knitr, Sweave, Roxygen
Stata MarkDoc, Weaver, Ketchup
Python Jupyter Notebook, Doxygen
Matlab Doxygen (limited)
Octave Doxygen [96]
SAS SASWeave [97], StatRep