From: Methods for enhancing the reproducibility of biomedical research findings using electronic health records
Statistical/Analytical tool
Relevant packages
R
RMarkdown, Knitr, Sweave, Roxygen
Stata
MarkDoc, Weaver, Ketchup
Python
Jupyter Notebook, Doxygen
Matlab
Doxygen (limited)
Octave
Doxygen [96]
SAS
SASWeave [97], StatRep
BioData Mining