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Discovery and replication of SNP-SNP interactions for quantitative lipid traits in over 60,000 individuals

  • Emily R. Holzinger1Email author,
  • Shefali S. Verma2,
  • Carrie B. Moore3,
  • Molly Hall2,
  • Rishika De4,
  • Diane Gilbert-Diamond5,
  • Matthew B. Lanktree6,
  • Nathan Pankratz7,
  • Antoinette Amuzu8,
  • Amber Burt9,
  • Caroline Dale8,
  • Scott Dudek2,
  • Clement E. Furlong9,
  • Tom R. Gaunt10,
  • Daniel Seung Kim9,
  • Helene Riess11,
  • Suthesh Sivapalaratnam12,
  • Vinicius Tragante13, 14,
  • Erik P.A. van Iperen15, 16,
  • Ariel Brautbar17,
  • David S. Carrell18,
  • David R. Crosslin9,
  • Gail P. Jarvik9,
  • Helena Kuivaniemi19,
  • Iftikhar J. Kullo20,
  • Eric B. Larson18,
  • Laura J. Rasmussen-Torvik21,
  • Gerard Tromp19,
  • Jens Baumert11,
  • Karen J. Cruickshanks22,
  • Martin Farrall23,
  • Aroon D. Hingorani24,
  • G. K. Hovingh12,
  • Marcus E. Kleber25,
  • Barbara E. Klein22,
  • Ronald Klein22,
  • Wolfgang Koenig26,
  • Leslie A. Lange27,
  • Winfried Mӓrz25, 28,
  • Kari E. North29,
  • N. Charlotte Onland-Moret30,
  • Alex P. Reiner31,
  • Philippa J. Talmud32,
  • Yvonne T. van der Schouw30,
  • James G. Wilson33,
  • Mika Kivimaki24,
  • Meena Kumari24, 34,
  • Jason H. Moore35,
  • Fotios Drenos32, 36,
  • Folkert W. Asselbergs13, 15, 36,
  • Brendan J. Keating37, 38Email author and
  • Marylyn D. Ritchie39Email author
Contributed equally
BioData Mining201710:25

https://doi.org/10.1186/s13040-017-0145-5

Received: 2 January 2017

Accepted: 12 July 2017

Published: 24 July 2017

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Open Peer Review reports

Pre-publication versions of this article are available by contacting info@biomedcentral.com.

Original Submission
2 Jan 2017 Submitted Original manuscript
9 May 2017 Reviewed Reviewer Report - Daniel Rotroff
10 Jun 2017 Author responded Author comments - Emily Holzinger
Resubmission - Version 2
10 Jun 2017 Submitted Manuscript version 2
20 Jun 2017 Reviewed Reviewer Report - Daniel Rotroff
Resubmission - Version 3
Submitted Manuscript version 3
Publishing
12 Jul 2017 Editorially accepted
24 Jul 2017 Article published 10.1186/s13040-017-0145-5

How does Open Peer Review work?

Open peer review is a system where authors know who the reviewers are, and the reviewers know who the authors are. If the manuscript is accepted, the named reviewer reports are published alongside the article. Pre-publication versions of the article are available by contacting info@biomedcentral.com.

You can find further information about the peer review system here.

Authors’ Affiliations

(1)
Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institute for General Medical Sciences, National Institutes of Health, Baltimore, USA
(2)
The Center for Systems Genomics, The Pennsylvania State University, University Park, State College, USA
(3)
Department of Surgery, Duke University, Durham, USA
(4)
Department of Genetics, Geisel School of Medicine at Dartmouth, Hanover, USA
(5)
Department of Epidemiology, Geisel School of Medicine at Dartmouth, Hanover, USA
(6)
Department of Medicine, McMaster University, Hamilton, Canada
(7)
Department of Lab Medicine and Pathology, University of Minnesota, Minneapolis, USA
(8)
London School of Hygiene and Tropical Medicine, London, UK
(9)
Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, USA
(10)
MRC Integrative Epidemiology Unit, University of Bristol, Bristol, UK
(11)
Institute of Epidemiology II, Helmholtz Zentrum München, German Research Center for Environmental Health, Neuherberg, Germany
(12)
Department of Vascular Medicine, Academic Medical Center, Amsterdam, The Netherlands
(13)
Department of Cardiology, Division Heart and Lungs, University Medical Center Utrecht, Utrecht, The Netherlands
(14)
Department of Medical Genetics, Biomedical Genetics, University Medical Center Utrecht, Utrecht, The Netherlands
(15)
Durrer Center for Cardiogenetic Research, ICIN-Netherlands Heart Institute, Utrecht, The Netherlands
(16)
Department of Clinical Epidemiology, Biostatistics and Bioinformatics, Academic Medical Center, Amsterdam, The Netherlands
(17)
Department of Medical Genetics, Marshfield Clinic, Marshfield, USA
(18)
Group Health Research Institute, Group Health Cooperative, Seattle, USA
(19)
Division of Molecular Biology and Human Genetics, Department of Biomedical Sciences, Stellenbosch University, Tygerberg, South Africa
(20)
Division of Cardiovascular Diseases, Mayo Clinic, Rochester, USA
(21)
Department of Preventive Medicine, Northwestern University Feinberg School of Medicine, Chicago, USA
(22)
Department of Population Health Sciences, Department of Ophthalmology and Visual Sciences, University of Wisconsin-Madison, Madison, USA
(23)
Department of Cardiovascular Medicine, The Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, UK
(24)
Department of Epidemiology and Public Health, UCL Institute of Epidemiology & Health Care, University College London, London, UK
(25)
Vth Department of Medicine, Medical Faculty Mannheim, Heidelberg University, Heidelberg, Germany
(26)
Department of Internal Medicine II – Cardiology, University of Ulm Medical Centre, Ulm, Germany
(27)
Department of Genetics, University of North Carolina School of Medicine at Chapel Hill, Chapel Hill, USA
(28)
Synlab Academy, Synlab Services GmbH, Mannheim, Germany
(29)
Department of Epidemiology, School of Public Health, University of North Carolina at Chapel Hill, Chapel Hill, USA
(30)
Julius Center for Health Sciences and Primary Care, University Medical Center Utrecht, Utrecht, The Netherlands
(31)
Division of Public Health Sciences, Fred Hutchinson Cancer Research Center, Seattle, USA
(32)
MRC Integrative Epidemiology Unit, School of Social and Community Medicine, University of Bristol, Bristol, UK
(33)
Department of Physiology and Biophysics, University of Mississippi Medical Center, Jackson, USA
(34)
ISER, University of Essex, Essex, UK
(35)
Institute for Biomedical Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, USA
(36)
Centre of Cardiovascular Genetics, Institute of Cardiovascular Science, Faculty of Population Health Sciences, University College London, London, UK
(37)
Division of Genetics, The Children’s Hospital of Philadelphia, Philadelphia, USA
(38)
Division of Transplantation, Department of Surgery, University of Pennsylvania, Philadelphia, USA
(39)
Biomedical and Translational Informatics, Geisinger Clinic, Danville, USA

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