Table 2 Shown are the brief descriptions of the eight microarray datasets of disease-related binary phenotypes (e.g., case and control). All datasets are publicly available
From: Meta-analytic support vector machine for integrating multiple omics data
Name | Study | Type | # of samples | Control | Case | Reference |
|---|---|---|---|---|---|---|
TCGA | breast cancer | mRNA | 300 | 234 (ER+) | 66 (ER-) | The Cancer Genome Atlas (TCGA) |
TCGA | breast cancer | Methylation | 300 | 234 (ER+) | 66 (ER-) | The Cancer Genome Atlas (TCGA) |
TCGA | breast cancer | CNV | 300 | 234 (ER+) | 66 (ER-) | The Cancer Genome Atlas (TCGA) |
KangA (batch 1) | IPF | mRNA | 63 | 11 | 52 | Kang et al (2012). GSE47460 |
KangB (batch 2) | IPF | mRNA | 96 | 21 | 75 | Kang et al. (2012) GSE47460 |
Konishi | IPF | mRNA | 38 | 15 | 23 | Konishi et al. (2009), GSE10667 |
Pardo | IPF | mRNA | 24 | 11 | 13 | Pardo et al. (2005), GSE2052 |