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Table 1 Type I error of simulation 1

From: Gene set analysis controlling for length bias in RNA-seq experiments

 

β=0.15

β=0.3

 
 

Set 1

Set 5

Set 10

Set 15

Set 20

Set 1

Set 5

Set 10

Set 15

Set 20

Weighted

0.007

0.007

0.006

0.009

0.017

0

0

0

0.001

0.001

Unweighted

0.002

0.007

0.008

0.014

0.022

0

0

0

0

0.003

GOSeq

0.019

0

0

0

0

0

0

0

0

0

CAMERA

0

0

0

0

0

0

0

0

0

0

  1. Type I error of selected sets (p-value <0.05) under different β. All four methods maintain the type I error under the controlled level (0.05)