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Table 5 Average overlap of enriched GO terms and pathways between the co-prediction and co-expression networks

From: Functional networks inference from rule-based machine learning models

  

Co-expression (SE)

Co-expression (SN)

Method

Cat.

C 1

C 2

C 3

C 4

C 1

C 2

C 3

C 4

Pearson

GO

0.280

0.414

0.297

0.432

0.315

0.576

0.367

0.488

 

path.

0.223

0.260

0.258

0.190

0.264

0.400

0.175

0.287

ARACNE

GO

0.348

0.621

0.272

0.565

0.333

0.612

0.277

0.535

 

path.

0.126

0.463

0.139

0.479

0.085

0.423

0.016

0.356

MIC

GO

0.316

0.513

0.283

0.487

0.300

0.614

0.289

0.527

 

path.

0.097

0.339

0.142

0.315

0.112

0.469

0.080

0.352

  1. Each co-expression network C i was compared to the corresponding co-expression networks SE(C i ) and SN(C i ). The overlap was averaged across all 8 datasets
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BioData Mining

ISSN: 1756-0381