Table 1 Overall occurrences and types of nodes and relationships included in the graph database
From: Representing and querying disease networks using graph databases
(a) Occurrences of node types | |||
Node type | Occurrences | ||
Protein | 20762 | ||
Disease | 4745 | ||
Pathway | 1288 | ||
Tissue | 32 | ||
Drug | 1602 | ||
GEO Comparison_test | 9 | ||
GEO Study | 3 | ||
(b) Types and occurrences of relationships | |||
Node type | Edge type | Node type | Occurrences |
Protein | BIOMARKER | Disease | 17216 |
Protein | THERAPEUTIC | Disease | 1209 |
Protein | GENETIC_VARIATION | Disease | 2612 |
Protein | KANEKO_ASSOCIATED | Disease | 251 |
Protein | IN_PATHWAY | Pathway | 26085 |
Protein | PPI_ASSOCIATION | Protein | 66678 |
Protein | PPI_COLOCALIZATION | Protein | 1162 |
Protein | PPI_GENETIC_INTERACTION | Protein | 43 |
Protein | SEQ_SIM | Protein | 92089 |
Protein | TISSUE_ENHANCED | Tissue | 4434 |
Protein | DRUG_TARGET | Drug | 6429 |
Protein | DRUG_ENZYME | Drug | 3204 |
Protein | DRUG_TRANSPORTER | Drug | 1529 |
Protein | DRUG_CARRIER | Drug | 222 |
GEO Comparison_test | PART_OF | GEO Study | 9 |
Protein | DEG_RELATED_TO | GEO Comparison_test | 87849 |