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Table 1 Top five GO BP term/publication enrichments reported by YeastMine [22] in genes identified by either PCA based unsupervised FE or cyclebase

From: Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression

PCA based unsupervised FE

Cyclebase

GO BP Term

p-Value

#

GO BP Term

p-Value

#

Cell cycle

[GO:0007049]

5.32E-10

24

Chromosome organization

[GO:0051276]

1.13E-8

20

Cell cycle process

[GO:0022402]

3.08E-8

21

Telomere maintenance via recombination

[GO:0000722]

3.34E-8

8

Mitotic cell cycle

[GO:0000278]

4.45E-8

17

DNA metabolic process

[GO:0006259]

3.50E-8

19

Mitotic cell cycle process

[GO:1903047]

2.23E-7

16

Telomere maintenance

[GO:0000723]

2.07E-6

9

Cell division

[GO:0051301]

1.02E-6

15

Anatomical structure homeostasis

[GO:0060249]

2.07E-6

9

Publication

PMID

p-Value

#

Publication

PMID

p-Value

#

Clustering time-varying gene expression profiles using scale-space signals

Genome-wide array-CGH analysis reveals YRF1 gene copy number variation that modulates genetic stability in distillery yeasts

 

[16452778]

9.74E-24

20

 

[26384347]

2.80E-12

7

Serial regulation of transcriptional regulators in the yeast cell cycle

Transcriptional effects of the potent enediyne anti-cancer agent Calicheamicin gamma(I)(1)

 

[11572776]

6.14E-17

16

 

[11880039]

1.11E-11

7

Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species

Linking DNA replication checkpoint to MBF cell-cycle transcription reveals a distinct class of G1/S genes

 

[22135306]

6.34E-12

10

 

[22333912]

2.32E-11

11

Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes

Mcm1p-induced DNA bending regulates the formation of ternary transcription factor complexes

 

[15155858]

3.71E-10

9

 

[12509445]

2.35E-11

8

Computational reconstruction of transcriptional regulatory modules of the yeast cell cycle

A genetic screen for yeast genes induced by sustained osmotic stress

 

[17010188]

4.17E-10

12

 

[12868060]

1.82E-10

7

  1. #: number of genes associated with GO BP terms or mentioned in the publications. PMID: PubMed ID
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BioData Mining

ISSN: 1756-0381