Table 1 List of in-house (TCGA) and curated data sets in the knowledge-base. A more detailed description of each data set, data type and study is in Additional files 1 and 2
From: Data integration to prioritize drugs using genomics and curated data
Data source | Study type | Number of studies |
|---|---|---|
In-house (analysis based) | Somatic CNA (gain frequency, deletion frequency, survival) | 11 |
DNA methylation (survival) | 4 | |
Expression (survival, fold-change) | 8 | |
Curated (literature based) | Amplified and overexpressed cancer genes | 1 |
Breast cancer brain metastasis genes | 1 | |
Cancer Gene Census activated | 1 | |
Cancer Gene Census inactivated | 1 | |
COSMIC | 3 | |
Tumorscape | 20 |