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Table 1 List of in-house (TCGA) and curated data sets in the knowledge-base. A more detailed description of each data set, data type and study is in Additional files 1 and 2

From: Data integration to prioritize drugs using genomics and curated data

Data source Study type Number of studies
In-house (analysis based) Somatic CNA (gain frequency, deletion frequency, survival) 11
  DNA methylation (survival) 4
  Expression (survival, fold-change) 8
Curated (literature based) Amplified and overexpressed cancer genes 1
  Breast cancer brain metastasis genes 1
  Cancer Gene Census activated 1
  Cancer Gene Census inactivated 1
  COSMIC 3
  Tumorscape 20