From: r2VIM: A new variable selection method for random forests in genome-wide association studies
 |  |  |  |  |  | Causal clumps | FP clumps | ||
---|---|---|---|---|---|---|---|---|---|
OR | n | Method | Factor | Total | Causal | no | no SNPs | no | no SNPs |
1.3 | 6000 | LR | Â | 765 | 9 | 9 | 741 | 2 | 24 |
1.3 | 6000 | r2VIM | 1 | 194 | 8 | 9 | 178 | 13 | 16 |
1.3 | 6000 | r2VIM | 3 | 110 | 8 | 9 | 106 | 3 | 4 |
1.3 | 6000 | r2VIM | 5 | 78 | 8 | 9 | 77 | 1 | 1 |
1.1 | 20000 | LR | Â | 106 | 5 | 5 | 105 | 1 | 1 |
1.1 | 20000 | r2VIM | 1 | 104 | 5 | 8 | 62 | 32 | 42 |
1.1 | 20000 | r2VIM | 3 | 43 | 4 | 7 | 30 | 8 | 13 |
1.1 | 20000 | r2VIM | 5 | 26 | 4 | 7 | 21 | 3 | 5 |