Testing multiple hypotheses through IMP weighted FDR based on a genetic functional network with application to a new zebrafish transcriptome study

Table 2 GSEA results for overlapping genes

Biological process	Network Freq.	Genome Freq.	Adjusted p-values	Genes
Notch signaling pathway	19.4 % (7/36)	0.8 % (49/6131)	8.38E-06	notch1b, jag2 gro2, dlb, dla, dld, jag1a
regulation of defense response	5.6 % (2/36)	0.0 % (3/6131)	2.92E-02	ifnphi1, mmp9
regulation of immune effector process	5.6 % (2/36)	0.1 % (4/6131)	3.87E-02	ifnphi1, mmp9
response to arsenic containing substance	5.6 % (2/36)	0.1 % (5/6131)	4.82E-02	il1b, ifnphi1

ISSN: 1756-0381