Skip to main content

Table 1 Data used in the study

From: Bacterial rose garden for metagenomic SNP-based phylogeny visualization

Country

Source

Number of samples

Number of donors and

Sequencing platform

Reads metrics

USA

Human Microbiome Project [21]

138

50 (single samples), 41 (two samples), 2 (three samples)

Illumina

101 bp, paired-end

Denmark

MetaHIT project [2]

85

85

Illumina

44 bp (13 samples), 75 bp (72 samples)

China

BGI-Shenzhen [4]

126

50 (type II diabetes), 70 (healthy), 6 (unknown)

Illumina

75 bp

Russia

Metagenome.ru consortia [15]

162

116(single sample), 2 (two technical repeats),14 (two samples and one technical repeat)

SOLiD

50 bp

Russia

Metagenome.ru consortia [15]

5

5

Illumina

100 bp

  1. Origin of WGS metagenome data used in prototype.