Skip to main content

Table 1 Data used in the study

From: Bacterial rose garden for metagenomic SNP-based phylogeny visualization

Country Source Number of samples Number of donors and Sequencing platform Reads metrics
USA Human Microbiome Project [21] 138 50 (single samples), 41 (two samples), 2 (three samples) Illumina 101 bp, paired-end
Denmark MetaHIT project [2] 85 85 Illumina 44 bp (13 samples), 75 bp (72 samples)
China BGI-Shenzhen [4] 126 50 (type II diabetes), 70 (healthy), 6 (unknown) Illumina 75 bp
Russia Metagenome.ru consortia [15] 162 116(single sample), 2 (two technical repeats),14 (two samples and one technical repeat) SOLiD 50 bp
Russia Metagenome.ru consortia [15] 5 5 Illumina 100 bp
  1. Origin of WGS metagenome data used in prototype.