From: Bacterial rose garden for metagenomic SNP-based phylogeny visualization
Country | Source | Number of samples | Number of donors and | Sequencing platform | Reads metrics |
---|---|---|---|---|---|
USA | Human Microbiome Project [21] | 138 | 50 (single samples), 41 (two samples), 2 (three samples) | Illumina | 101 bp, paired-end |
Denmark | MetaHIT project [2] | 85 | 85 | Illumina | 44 bp (13 samples), 75 bp (72 samples) |
China | BGI-Shenzhen [4] | 126 | 50 (type II diabetes), 70 (healthy), 6 (unknown) | Illumina | 75 bp |
Russia | Metagenome.ru consortia [15] | 162 | 116(single sample), 2 (two technical repeats),14 (two samples and one technical repeat) | SOLiD | 50 bp |
Russia | Metagenome.ru consortia [15] | 5 | 5 | Illumina | 100 bp |