Figure 6
From: Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns
Example of a T-GLY-ARG pattern match. Residues matching the FreSCO T-GLY-ARG in the molecular structure of the DNA-binding cold shock protein from Bacillus caldolyticus [PDB:2HAX] [54]. Different subunits of the pattern have been coloured: thymine nucleotide (red), glycine (yellow) and arginine (green). Remainder of the protein and DNA-molecule have been coloured grey. The left part of the figure features the pattern in stick form, right features the labels of the non-hydrogen atoms in the pattern.