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Figure 3 | BioData Mining

Figure 3

From: Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns

Figure 3

Illustration of the pattern distribution in a mined protein structure. Protein structure of the HIV-1 protease homodimer [PDB:1DAZ] [36]. Only one of the homodimer chains was mined for FreSCOs (represented in cartoon and stick format), the other is represented in light grey (stick format only). Significant triplet FreSCOs in the mined protein structure are visualized by colorization of the best matching residues, i.e. those with the smallest enclosing ball within this protein structure. Each pattern is assigned a unique color based on amino acid content. Residues that do not match any significant patterns are colored in dark grey.

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