Single ended | Â | Â | Â | Â | Â | |||
---|---|---|---|---|---|---|---|---|
Length | Number | Bowtie2 2.0.0 | Correct | Mapped | Bowtie2 GP | Correct | Mapped | speedup % |
100 | 11945249 | 684 ± 6 | 89.23% | 98.88% | 782 ± 7 | 89.05% | 98.25% | 14 |
150 | 7963499 | 556 ± 2 | 93.58% | 99.48% | 696 ± 5 | 93.20% | 98.58% | 25 |
250 | 4778100 | 413 ± 9 | 97.14% | 99.74% | 509 ± 11 | 96.04% | 98.33% | 23 |
400 | 2986312 | 342 ± 19 | 98.77% | 99.86% | 371 ± 29 | 96.50% | 97.69% | 8 |
Length | Number | Bowtie2 2.0.0 | Correct | Mapped | Bowtie2 GP | Correct | Mapped | speedup % |
100 | 11945249 | 486 ± 6 | 93.54% | 98.81% | 640 ± 16 | 92.98% | 98.16% | 32 |
150 | 7963499 | 481 ± 3 | 96.33% | 99.48% | 701 ± 3 | 95.46% | 98.55% | 46 |
250 | 4778100 | 462 ± 12 | 98.54% | 99.82% | 656 ± 23 | 97.05% | 98.40% | 42 |
400 | 2986312 | 425 ± 41 | 99.36% | 99.94% | 524 ± 65 | 96.87% | 97.76% | 23 |
Paired end | Â | Â | Â | Â | Â | |||
Length | Number | Bowtie2 2.0.0 | Correct | Mapped | Bowtie2 GP | Correct | Mapped | speedup % |
100 | 5972625 | 674 | 94.47% | 99.41% | 827 | 94.03% | 98.70% | 23 |
150 | 3981750 | 736 | 91.99% | 98.82% | 956 | 91.61% | 97.62% | 30 |
250 | 2389050 | 826 | 95.46% | 98.96% | 1041 | 94.38% | 97.33% | 26 |
400 | 1493156 | 658 | 97.79% | 99.24% | 822 | 95.65% | 97.08% | 25 |
Length | Number | Bowtie2 2.2.3 | Correct | Mapped | Bowtie2 GP 2.2.3 | Correct | Mapped | speedup % |
100 | 5972625 | 702 | 95.19% | 98.91% | 921 | 94.74% | 98.20% | 31 |
150 | 3981750 | 717 | 93.53% | 98.93% | 999 | 93.07% | 97.66% | 39 |
250 | 2389050 | 763 | 95.49% | 98.61% | 1044 | 94.21% | 96.83% | 37 |
400 | 1493156 | 461 | 98.29% | 99.39% | 616 | 95.97% | 97.24% | 34 |