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Table 2 Results of different SNP correlation analyses

From: Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells

Expression measurement

Area of SNPs

Group

Number of significant correlation pairs/number of all pairs

Number of unique genes/transcripts/exons affected

Number of unique genes

Number of correlating SNPs inside/outside gene/transcript/exon regions

Gene

gene5000bp

hiPSC

0/100363

-

-

-/-

Gene

gene5000bp

hESC

206/129416

56

56

190/16

Gene

gene5000bp

All

27/149986

20

20

22/5

Transcript

Transcript

hiPSC

5/197884

5

1

5/-

Transcript

Transcript

hESC

1/231846

1

1

1/-

Transcript

Transcript

All

22/296333

20

8

22/-

Exon

Short

hiPSC

0/75180

-

-

-/-

Exon

Short

hESC

0/95038

-

-

-/-

Exon

Short

All

53/113050

42

35

4/49

Exon

Long

hiPSC

0/821655

-

-

-/-

Exon

Long

hESC

0/955091

-

-

-/-

Exon

Long

All

651/1230955

342

159

4/647

  1. Short SNP area means the area of the studied exon and adjacent introns, long area means the whole gene area.