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Table 2 Results of different SNP correlation analyses

From: Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells

Expression measurement Area of SNPs Group Number of significant correlation pairs/number of all pairs Number of unique genes/transcripts/exons affected Number of unique genes Number of correlating SNPs inside/outside gene/transcript/exon regions
Gene gene5000bp hiPSC 0/100363 - - -/-
Gene gene5000bp hESC 206/129416 56 56 190/16
Gene gene5000bp All 27/149986 20 20 22/5
Transcript Transcript hiPSC 5/197884 5 1 5/-
Transcript Transcript hESC 1/231846 1 1 1/-
Transcript Transcript All 22/296333 20 8 22/-
Exon Short hiPSC 0/75180 - - -/-
Exon Short hESC 0/95038 - - -/-
Exon Short All 53/113050 42 35 4/49
Exon Long hiPSC 0/821655 - - -/-
Exon Long hESC 0/955091 - - -/-
Exon Long All 651/1230955 342 159 4/647
  1. Short SNP area means the area of the studied exon and adjacent introns, long area means the whole gene area.
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